PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF024100010CFD_t1
Common NameTAA_ctg0091b.00160.1, TRAES_3BF024100010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 465aa    MW: 52576.6 Da    PI: 4.5034
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF024100010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB32.61.9e-102896381
                    NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81
                             e+ +flPia++ rim+k++P n+ i ++a    qe v        +   d c+r +  +++gddll  +a+ Gf+ y +
  TRAES3BF024100010CFD_t1 28 ERGAFLPIADIRRIMRKAIPPNGEIDEEAA---QELVP-------EARGDGCKRARPEAMAGDDLLPEMAKQGFQAYPH 96
                             6789*********************99875...45444.......456799************************9965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-52860IPR009072Histone-fold
SuperFamilySSF813833.14E-10114173IPR001810F-box domain
Gene3DG3DSA:3.80.10.107.5E-23118388IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS501818.65118165IPR001810F-box domain
PfamPF129373.1E-6121165IPR001810F-box domain
SuperFamilySSF520471.43E-7203289No hitNo description
SuperFamilySSF520471.43E-7325387No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016874Molecular Functionligase activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSNPPASPSG DVGSRISGSL AAGGSREERG AFLPIADIRR IMRKAIPPNG EIDEEAAQEL  60
VPEARGDGCK RARPEAMAGD DLLPEMAKQG FQAYPHKNRV ELPCTMEAEP NPLPVSDARD  120
WSELPLDALS AIFMKLGTIE ILMGAGLVCR SWLVAAKSPE LWRFVDMTRH KLVFSKGGNV  180
MYKMAKVAID RSDGRMESFW AQKFVTSELL NYIASRCNSL KSIRLIGAYY FWDDEDVVIK  240
LAAKCPMLEE IEYSGQKLTW DFFKGIGAAR PALKRLRVCL PWFDSDSIER EIRMEQRQND  300
EEEEEEEEEP YEAWEARHNE EAFAIAKSLH ELRLLQMAGY GLTKKGVYAI LEGCPHLEFL  360
DLRECGHLLV DAELKARCAN IKHVRLPGAW PHAHCPELDT IEEDEGEVIE MPNLYEIEAQ  420
ALHNEAAMDN DDYGENYWDD YSLPSPPGSP VPTYSMDDPR YYWEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3718790.0AK371879.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2142L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234430.11e-179PREDICTED: F-box protein SKIP19-like isoform X3
RefseqXP_010234431.11e-179PREDICTED: F-box protein SKIP19-like isoform X4
TrEMBLD8L9I90.0D8L9I9_WHEAT; Ubiquitin-protein ligase, putative, expressed
STRINGMLOC_58202.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP548710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.61e-16nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Choulet F, et al.
    Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces.
    Plant Cell, 2010. 22(6): p. 1686-701
    [PMID:20581307]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]